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Dissertations |
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MARIA KAROLAYNNE DA SILVA
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Development of a Multi-Epitope Subunit Vaccine Against a Neglected Arbovirus of the Americas: an Immunoinformatics and Molecular Modeling Approach.
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Advisor : JONAS IVAN NOBRE OLIVEIRA
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COMMITTEE MEMBERS :
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JONAS IVAN NOBRE OLIVEIRA
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JOAO FIRMINO RODRIGUES NETO
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CLAUDIO BRUNO SILVA DE OLIVEIRA
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Data: Mar 30, 2023
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Show Abstract
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The Mayaro virus (MAYV) is an emerging arbovirus in the Americas that can cause debilitating arthritogenic diseases. Although the biology of MAYV is not fully understood, it is known to be closely related to arthritogenic alphaviruses such as chikungunya, Ross River, and O’nyong nyong viruses. Effective control of the spread of these diseases requires identification of infected individuals and the development of preventive and prophylactic therapies. However, currently, the only available approach for controlling MAYV is vector control, as there are no licensed vaccines to prevent MAYV infection or therapies to treat it. In this study, we used immunoinformatics and molecular modeling approaches to identify potential T cell epitopes for vaccination against the Mayaro virus. To do this, we analyzed 127 MAYV genomes sequenced in the Americas (08 Bolivia, 72 Brazil, 04 French Guiana, 05 Haiti, 20 Peru, 04 Trinidad and Tobago, and 14 Venezuela) and identified short protein sequences that can bind to MHC class I and class II alleles. These promiscuous epitopes were selected based on their conservation and immunogenicity. Through immunoinformatics and molecular modeling analyses, we identified 56 potential MHCI/TCD8+ and 29 potential MHC-II/TCD4+ epitopes, with only specific protein sequences (nsP1191-199, nsP1501-509, nsP1498-506, nsP3348-356, nsP4305-314 and nsP4212-221(nsP157-71 , nsP116-30, nsP1182-196, nsP1180-194, nsP115-29, nsP2640-654, nsP2639-653, nsP2679-693, nsP2677-691 , nsP2680-694, nsP3127-141, nsP362-76, nsP4414-428, nsP4413-427, nsP4412-426 and nsP4372-386) TCD8+ (TCD4+) exhibiting high antigenicity, conservation, non-allergenicity, non-toxicity, and excellent population coverage. Based on these results, we developed a multiepitope vaccine coupled to the TLR3 receptor and improved its quality through quantum mechanical calculations. These results have important implications for advancing diagnosis, vaccine development, and immunotherapeutic interventions against the Mayaro virus.
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2
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RONALD MURYELLISON OLIVEIRA DA SILVA GOMES
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Application of group I introns from the mitogenome of Cryptococcus neoformans and Cryptococcus gattii for species identification and their association with antifungal susceptibility
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Advisor : RAQUEL CORDEIRO THEODORO
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COMMITTEE MEMBERS :
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RAQUEL CORDEIRO THEODORO
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SILVIA REGINA BATISTUZZO DE MEDEIROS
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VANIA SOUSA ANDRADE
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MARCUS DE MELO TEIXEIRA
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Data: Apr 17, 2023
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Show Abstract
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The species complexes of Cryptococcus neoformans and Cryptococcus gattii are composed of pathogenic fungi that kill over 180,000 people annually worldwide, having meningoencephalitis as the main symptom of cryptococcosis. Characteristics such as virulence and antifungal susceptibility can vary within each species according to fungal genotype: C. neoformans is divided into molecular types VNI, VNII, VNIII, and VNIV, and C. gattii into VGI, VGII, VGIII, and VGIV. Therefore, specific molecular markers are necessary for differential diagnosis. Autocatalytic group I introns can be a potential target for distinguishing between molecular types of these yeasts, as they have polymorphisms regarding their presence and base pair sequences. Furthermore, since the auto-splicing of these elements is vital for the fungal cell, they are considered important therapeutic targets since they are absent from the human genome. Therefore, this study aimed to evaluate the presence of group I introns in the mitochondrial cob and cox1 genes of Cryptococcus fungal isolates, search for ORFs with endonuclease genes in intronic sequences, investigate the potential use of these genetic elements as molecular markers for differentiation of genotypes and/or species, and analyze their relationship with antifungal susceptibility andin addition to study their origin, distribution, and evolution through phylogenetic analyses. The data obtained from intron amplification of cob and cox1 genes showed that the C. neoformans complex has, on average, fewer introns in its mitogenome, and there is a great polymorphism of presence and size of these elements among and within genotypes, making it impossible to use a single intronic marker to differentiate genotype and/or species in the C. neoformans and C. gattii complexes. However, differentiation between species is possible with combinations of PCRs of mtLSU and cox1 introns for C. neoformans species and mtLSU and cob introns for C. gattii. Approximately 80.5% of the sequenced introns had homing endonucleases, and phylogenetic analyses showed that introns occupying the same insertion site form monophyletic clades and probably have a common ancestor that invaded this site before the species diverged. There was only one case of heterologous invasion, probably originating from horizontal transfer between a VGIV genotype isolate and the lichenized fungus Arthonia susa. Regarding susceptibility assays to antifungal agents, it was observed that the minimum inhibitory concentration (MIC) values of Fluconazole, 5-Flucytosine, and Pentamidine were statistically associated with species complexes, with C. gattii having higher MICs for Fluconazole and C. neoformans having higher MICs for 5-Flucytosine and Pentamidine. The presence of introns was related to susceptibility to Amphotericin B, for which a higher number of introns was associated with lower MIC values, and to 5-Flucytosine and Pentamidine, for which the influence of the presence of introns varied between complexes: regarding 5-Flucytosine, the presence of introns was related to lower susceptibility in C. neoformans and higher in C. gattii, and the opposite scenario was observed for Pentamidine, for which introns were associated with higher susceptibility in C. neoformans and lower in C. gattii.
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3
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MARIANNA BARROS SILVA
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Characterization of Chondroitin-4-Sulfate Isolated from Tilapia Viscera (Oreochromis Niloticus) and Its Effect on Modulating Calcium Oxalate Crystallization
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Advisor : RAFAEL BARROS GOMES DA CAMARA
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COMMITTEE MEMBERS :
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RAFAEL BARROS GOMES DA CAMARA
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MOACIR FERNANDES DE QUEIROZ NETO
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MOACIR FRANCO DE OLIVEIRA
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Data: May 15, 2023
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Show Abstract
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Glycosaminoglycans (GAGs) are sulfated polysaccharides that are naturally present in urine and have been identified as modulators of urinary stone formation. Among GAGs, chondroitin sulfate (CS) has shown promise as a possible modulator of crystal growth. Studies have revealed that aquatic organisms are alternative sources of CS with therapeutic potential. The fish Oreochromis niloticus, also known as Nile tilapia, was chosen for this study due to its high production and potential for environmental damage. The objective of this study was to isolate CS from O. niloticus viscera and evaluate its modulating effect on calcium oxalate (OxCa) crystal growth. The tilapia culture residues were subjected to an enzymatic proteolysis process, followed by complexation and decomplexation with Lewatit cationic resin to obtain a mixture of GAGs. The GAGs were then purified using fractionation with acetone and ion exchange chromatography. The purified CS was identified as chondroitin-4-sulfate (CSA) and named tilapia chondroitin sulfate (CST). CST (0.01 mg/mL) was found to decrease the size of OxCa crystals and increase the number of crystals formed by 15 times. Fluorescence microscopy assays revealed that CST interacts with the faces of the CaOx monohydrate (COM) crystal, but not with dihydrate crystals. Scanning electron microscopy indicated that CST alters the morphology of COM crystals, making them assume a more elongated shape. Additionally, the study showed that CST does not present cytotoxicity under the evaluated conditions (0.01 – 0.2 mg/mL) in Madin-Darby canine renal cell (MDCK) cells. These findings suggest that CST has potential as an anti-kidney stone agent, but further in vivo studies are needed to confirm its efficacy.
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4
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TATIANA DOS SANTOS PAIS
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TERATOGENIC SCREENING IN ZEBRAFISH (Danio rerio) OF THE CRUDE EXTRACT RICH IN CAROTENOIDS OF CANTALOUPE MELON (Cucumis melo L.) AND NANONOENCAPSULATED IN GELATIN
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Advisor : ANA HELONEIDA DE ARAUJO MORAIS
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COMMITTEE MEMBERS :
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ANA HELONEIDA DE ARAUJO MORAIS
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CHRISTINA DA SILVA CAMILLO
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THAIS SOUZA PASSOS
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KELLY ALENCAR SILVA
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Data: Sep 14, 2023
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Show Abstract
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Cantaloupe melon has an orange pulp rich in carotenoids, which can promote several beneficial effects on human health. However, carotenoids are extremely unstable in the presence of oxygen, light, and heat, which may reduce their bioactive properties. In this context, nanoencapsulation is an excellent strategy to ensure the preservation and enhancement of bioactive effects. On the other hand, one of the major current concerns is related to the toxicity effects of these nanoparticles. Therefore, this study aimed to evaluate the teratogenicity of the crude extract rich in carotenoids from Cantaloupe melon (CE) and of the porcine gelatin-based nanoparticles containing CE (EPG) in an animal model of zebrafish (Danio rerio). The CE was obtained from Cantaloupe melon (Cucumis melo L.) in processes that involved drying the melon pulp (55 ̊C/24 h) to obtain flour, maceration in ethanol (1:4 w/v) and partition in hexane (1:1 v/v). The nanoparticles were obtained using the oil-in-water (O/W) emulsification technique. For the characterization of nanoparticles in terms of morphology, chemical interactions, particle size and encapsulation efficiency, Scanning Electron Microscopy (SEM), Fourier Transform Infrared Spectroscopy (FTIR), Laser Diffraction and Incorporation Efficiency (IE) analyses were carried out (IE), respectively. In the experiments in an animal model with zebrafish, for the embryotoxicity test, the 308 embryos, divided into seven groups, were exposed to concentrations of 12.5 mg/L and 50.0 mg/L of CE and EPG during 96 hours post fertilization (hpf) and seven days post fertilization (dpf) the optomotor test was performed. In the toxicity tests with adult zebrafish, the 60 fish were divided into six groups exposed to 12.5 mg/L and 50.0 mg/L of CE and EPG for 96 hours, and then submitted to light/dark neurotoxicity, new and social tank. Based on the characterization results, EPG showed an IE of 94% (4.04), a smooth surface without depressions, a diameter of 88.7 nm (7.02), and a polydispersion index of 0.41 (0.03). FTIR evidenced the emergence of new vibrational bands in EPG compared to CE, demonstrating new chemical interactions. In animal model experiments, no anomalies were observed after exposure to 96 hpf, in the groups treated with CE and EPG, and heartbeats remained between 132 and 138 rpm within the expected range for embryos, similar to the negative control and DMSO groups. The groups that received CE and EPG did not show significant morphological alterations. The mortality level was below 20%, revealing neither an embryotoxic nor teratogenic character for CE and EPG in the concentrations used. There was a significant improvement in the visual motor response of larvae exposed to CE and EPG, which can be attributed to the antioxidant power and vitamin A precursor of carotenoids. No adverse effects were identified on the behavior of adults, all were similar to the behavior of the control group, without signs of anxiety, stress, or changes in swimming, speed or sociability that would indicate any toxicity. Therefore, it was found that CE and EPG maintained characteristics found in previous studies, proving the method's reproducibility. There were no signs of teratogenicity, cardiotoxicity, or neurotoxicity in the larvae, and both CE and EPG improved cognitive function and response in the evaluated model. Adult fish showed no signs of anxiety or any other evidence of toxicity, showing that CE and EPG are potentially safe.
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5
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ELISÂNGELA DA COSTA SILVA
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TOXICITY ANALYSIS OF THE BIOMATERIAL HYDROXYAPATITE FUNCTIONALIZED WITH STRONTIUMION
(Sr-HA) IN ZEBRAFISH (Danio rerio)
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Advisor : SILVIA REGINA BATISTUZZO DE MEDEIROS
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COMMITTEE MEMBERS :
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SILVIA REGINA BATISTUZZO DE MEDEIROS
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VANESSA DE PAULA SOARES RACHETTI
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CÉSAR KOPPE GRISÓLIA
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Data: Oct 27, 2023
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Show Abstract
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Hydroxyapatite (HA) is an essential inorganic component found in human bone tissue, and its compatibility with biological systems makesitwidelyapplicableinvariousbiomedicalfields.Theabilityto incorporate different ions into the HA structure allows the modification of its properties, making them more similar to those of bone tissue itself. One of these ions that can be incorporated is strontium, known for its ability to stimulate osteogenic activity. However, the biological effects of strontium-functionalized HA nanoparticles(SrHA)arenotyetcompletelyunderstood.Toaddress this gap, an embryotoxicity study was performed using zebrafish (Danio rerio), following OECD 236 guidelines. Zebrafish embryos were exposed to microspheres containing synthesized nSrHA nanoparticles at 5 °C and 90 °C for 120 hours. The mortality rate, development parameters, and production of reactive oxygen species (ROS) were evaluated during the test. At 168 hours post fertilization (hpf), behavioral parameters were assessed through motor responses and anxiety-like behavior to verify whether the biomaterialscausedneurotoxiceffects.Theresultsrevealedthatthe survival rate decreased in the SrHA group synthesized at 5 °C, and there was an increase in ROS production in this group. However, none of the biomaterials caused morphological changes that would suggest toxicity during larval development. Furthermore,behavioral tests showed no significant differences in any experimental groups, suggesting that exposure to the tested biomaterials did not have neurotoxic effects. These findings provide valuable information on the safety of HA-based nanostructured biomaterials and highlight theirpromisingapplicabilityinbonetissuerepair.Withtheincreasing use of hydroxyapatite-based biomaterials, investigations into the safety of these materials areessential.
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6
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NATHÁLIA CRISTINA LOPES DE JORGE
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Chemical, antioxidant and toxicological prospecting of Marine Sponges Suberites aurantiacus, Mycale angulosa and Halichondrida from the Potiguar Basin – RN.
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Advisor : ELIZEU ANTUNES DOS SANTOS
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COMMITTEE MEMBERS :
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ELIZEU ANTUNES DOS SANTOS
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HUGO ALEXANDRE DE OLIVEIRA ROCHA
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DAYANNE LOPES GOMES
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Data: Nov 10, 2023
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Show Abstract
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Marine sponges are very promising organisms in the search for bioactive molecules with a range of biological activities already reported in the scientific literature, with an emphasis on antioxidant agents. Knowing that oxidative stress is associated with various health conditions, such as cancer, Parkinson's, Alzheimer's, among others, the search for compounds that act on oxidative control becomes a key element in the quest for new treatments. The Potiguar Basin of RN has a vast coastline with a rich diversity of marine sponge species, but, on the other hand, it is little explored in terms of its biotechnological potential. In this work, we conducted chemical, antioxidant, and toxicological prospecting of three species of sponges collected on the coast of the Potiguar Basin: Suberites aurantiacus, Mycale (Zygomycale) angulosa, and Halichondrida. Sequential extractions were carried out with n-hexane (HE) and chloroform/methanol, and the extracts obtained only with HE were named HESUB, HEMYC, and HEHALI, while the extracts obtained only with CM were named CMSUB, CMMYC, and CMHALI for S. aurantiacus, M. angulosa, and Halichondrida, respectively. The yield of the extracts was the determining factor for choosing the CM extracts that would be chemically characterized by GC/MS and evaluated for their antioxidant activity using the following methods: Total Antioxidant Capacity (CAT), Reducing power, ion sequestration (superoxide, DPPH, Hydroxyl Radical (OH)) and Ion Chelating activity (Ferrous (Fe2+) and Cuprous (Cu2+)). CM extracts from the three sponges were also subjected to toxicological tests in vitro with human erythrocytes and in vivo with Tenebrio molitor larvae. Chemical characterization by GC/MS revealed the presence of alcohols, alkaloids, phenolic compounds, and lipids (mainly sterol classes). In in vitro antioxidant tests, the extracts showed the ability to scavenge DPPH radicals (CMHALI 60.91% ± 3.05; CMSUB 59.32% ± 3.71 and CMMYC 53.78% ± 6.96 at 1000 µg/mL) and hydroxyl radicals (CMSUB 96% ± 0.04 at a concentration of 2000 µg/mL; CMMYC 37% ± 0.17 and CMHALI 54% ± 0.086 with 1000 µg/mL of extract) and chelating copper ions (CMHALI 113.5% ± 1.93; CMSUB 112.1% ± 5.81 and CMMYC with 110.6% ± 3.19 activity with 25 µg/mL of the sample), with a particular emphasis on the copper chelating activity for three extracts. In vitro and in vivo toxicological tests revealed that, in both tests, at different concentrations, the samples did not exhibit toxic effects. Furthermore, antibacterial tests were conducted against the pathogenic bacteria Staphylococcus aureus and Escherichia coli, but no such activity was observed. The results presented here suggest that marine sponges from this coast have pharmacological properties that can be investigated with a view to isolating the metabolites responsible for the antioxidant activities presented. Furthermore, there is the possibility of investigating the potential of these metabolites in relation to other biological activities.
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7
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BEATRIZ HELENA DANTAS RODRIGUES DE ALBUQUERQUE
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CHARACTERIZATION OF MOLECULAR MARKERS WITH POTENTIAL FOR SEMINAL SCREENING: VIRUSES AND METABOLIC DISEASES
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Advisor : DANIEL CARLOS FERREIRA LANZA
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COMMITTEE MEMBERS :
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DANIEL CARLOS FERREIRA LANZA
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DANIELLE BARBOSA MORAIS
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JULLIANE TAMARA ARAUJO DE MELO CAMPOS
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KYVIA BEZERRA MOTA
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Data: Nov 10, 2023
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Show Abstract
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Infertility is a condition that affects millions of couples of reproductive age worldwide, involving both the male and female reproductive systems. While male factors contribute to half of infertility cases, a significant portion of these cases remains without an identified cause. This suggests the possibility of unidentified etiological factors that are not adequately assessed by current diagnostic investigations. In this context, the conducted study aimed to characterize molecular markers and viruses associated with male health and semen quality. The first chapter provides a comprehensive review of the human seminal virome. It was observed that the number of studies investigating viruses occurring in human semen has increased, and thus far, these studies have mostly been prospective or related to specific clinical findings. Through the combined analysis of all these articles, viruses related to deteriorating seminal parameters were listed, and a new panel with the main viruses already described that possibly affect fertility and male health was proposed. This panel can assist in evaluating semen quality and serve as a research tool in cases of infertility. The second chapter aimed to identify genes relevant to the diagnosis and early detection of hereditary metabolic disorders, using renowned databases such as OMIM and Orphanet. A total of 228 genes associated with metabolic disorders, referred to as GADM here, were identified from the 372 records extracted from OMIM. Notably, these genes are distributed across nearly all chromosomes, with a notable absence on the Y chromosome. In terms of genetic variants, the APOB gene stood out with the highest number recorded. Delving into phenotype prevalence, amino acid metabolism disorders emerged as the most prevalent category. It was also observed that autosomal recessive inheritance was dominant. Through a meticulous analysis of protein-protein interactions, an intricate network linking genes with highly prevalent phenotypes to less frequent ones was revealed. This mapping has significant implications as it indicates key genes for future investigations. From this research, targeted panels of primary genes for screening and diagnosing metabolic diseases in various contexts were established. This study underscores the need to integrate protein-protein interaction data to illuminate the underlying mechanisms of metabolic phenotypes and potentially discover new therapeutic targets or biomarkers for these conditions. In summary, the findings of this dissertation contribute to advancing diagnostic strategies for male factor infertility and to a more comprehensive understanding of genetic and reproductive counseling for metabolic diseases.
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BELICIA SANTANA DA SILVA
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CHARACTERIZATION AND EXPRESSION OF GENE AND ENVIRONMENTAL STRAINS OF THE GENUS ACINETOBACTER SP. ON OIL BIODEGRADATION
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Advisor : LUCYMARA FASSARELLA AGNEZ LIMA
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COMMITTEE MEMBERS :
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LUCYMARA FASSARELLA AGNEZ LIMA
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THIAGO BRUCE RODRIGUES
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VÂNIA MARIA MACIEL MELO
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Data: Dec 1, 2023
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Show Abstract
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Pollution from oil can have significant and long-lasting effects on the environment. Bioremediation can be an alternative to this problem. Several studies report the biotechnological potential for bioremediation by environmental Acinetobacter baumannii. However, it is still necessary to expand the understanding of the genetic mechanisms of this species to maximize its biotechnological potential. Therefore, this work aims to characterize strains of Acinetobacter baumannii oleumficedula, identify genes related to the biodegradation of hydrocarbons, as well as their presence in degradation pathways and analyze the expression of target genes. To this end, analyzes of biosurfactant production, estimation of hydrocarbon degradation, gene expression analysis and evaluation of the strains' genome were carried out. From these analyses, it was possible to verify the efficiency of all strains in the production of biosurfactant, the strains presented an estimate of hydrocarbon degradation that varied from 7.94 to 69.82%. Approximately 81 different genes associated with bioremediation were identified in 16 distinct metabolic pathways. The expression of 12 genes was observed, all of which were upregulated. By observing the gnomic context, the genetic similarity of the strains was verified. However, even with genetic similarities, the strains show significant phenotypic differences, which can be attributed to the presence of a master regulator or regulon. Finally, it can be inferred that all strains are promising for application in hydrocarbon degradation.
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9
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ARIANA PEREIRA DA SILVA
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PROSPECTION OF THE ANTIOXIDANT ACTIVITY IN VITRO AND IN VIVO OF CHAÑAR SEED (GEOFFROEA DECORTICANS) EXTRACTS (GILL. EX HOOK. ET ARN.) BURKART (FABACEAE).
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Advisor : KATIA CASTANHO SCORTECCI
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COMMITTEE MEMBERS :
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KATIA CASTANHO SCORTECCI
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RAFAEL BARROS GOMES DA CAMARA
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CARLOS HENRIQUE SALVINO GADELHA MENESES
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Data: Dec 22, 2023
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Show Abstract
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The use of plants for medicinal purposes has been practiced since time immemorial. Various parts of plants are used for this purpose, and their use is as a complementary therapeutic source Geoffroea decorticans, popularly known as Chañar, is a plant native to Chile, All parts of this plant are used in folk medicine, ranging from expectorant activity, including bronchopulmonary disorders and pain relief, as well as antioxidant and antinociceptive activity. However, few studies are reporting such activities with Chañar seed extracts. That said, our work aimed to evaluate and characterize the antioxidant, cytotoxic and protective potential against oxidative stress induced by copper sulfate (CuSO4) of the ethanolic (EE) and aqueous (EA) extracts of Chañar seed using in vitro and in vivo methodologies. The two extracts produced were phytochemically characterized using HPLC - GC-MS/MS, as well as spectrophotometric tests such as total phenolic compounds and total flavonoids. Subsequently, biochemical tests were carried out to assess the in vitro antioxidant potential using five spectrophotometric tests (total antioxidant capacity-CAT, reducing power; 2,2-diphenyl-1-picrylhydrazyl-DPPH; copper and iron chelation) aimed at verifying the possible modes of action by which these bioactive compounds could be contributing to the maintenance of cellular redox homeostasis. The 3T3 ATCCCCL-92 fibroblast cell line was also used to assess the cytotoxicity of EE and EA, as well as the protective role of the extracts when this cell line was subjected to the stress agent copper sulfate (CuSO4), in addition to the potential to induce cell migration or not. After carrying out the in vivo tests, the extracts were tested on an invertebrate animal model (Tenebrio molitor). Survival tests were carried out to assess the toxicity of the extracts and their protective capacity against oxidative stress caused by copper sulfate. Melanisation parameters were also assessed. The results obtained by chromatography detected the presence of secondary metabolites such as phytol, alpha-tocopherol, vitexin and rutin. The in vitro spectrophotometric tests demonstrated the antioxidant capacity of the extracts to act by different mechanisms of action (inhibiting, sequestering and chelating). The tests on the 3T3 cell model demonstrated the absence of EE and EA cytotoxicity, also conferring protection against (CuSO4) stress and cell migration capacity. In the animal model, the extracts once again showed their excellent protective capacity against oxidative stress, capable of combating the free radicals generated, mitigating the melanization exacerbated by stress and the lack of modulation in the insect's metamorphosis process. Taken together (in vitro and in vivo), the EE and EA extracts of Chañar seeds are a source of bioactive compounds with excellent antioxidant properties.
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Thesis |
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1
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ANNA BEATRIZ SANTANA LUZ
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Experimental models that simulate human proteolytic digestion and in silico prospecting of peptides derived from purified trypsin inhibitor from tamarind seeds with anti-SARS-CoV-2 potential
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Advisor : ANA HELONEIDA DE ARAUJO MORAIS
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COMMITTEE MEMBERS :
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ADRIANA FERREIRA UCHOA
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ALEXANDRE COELHO SERQUIZ
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ANA HELONEIDA DE ARAUJO MORAIS
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DAVI SERRADELLA VIEIRA
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NORBERTO DE KASSIO VIEIRA MONTEIRO
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RICHELE JANAINA ARAUJO MACHADO
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Data: Jan 23, 2023
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Show Abstract
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Proteins are multifunctional macromolecules and also act as sources of amino acids and energy. Protein hydrolysis also generates numerous bioactive peptides with different functions in the body. In this context, proteins are sources of biological products that can be used for the control and treatment of various human diseases, and may be candidates for the management and treatment of diseases such as COVID-19. To investigate experimental models that mimic human digestion and prospect peptides from trypsin inhibitor purified from tamarind (TTIp) seeds. The first two chapters of this study are referring to a systematic review (SR), and are organized as follows: the first chapter presents the SR protocol registered in the International Prospective Register of Systematic Reviews (under number CRD42020198709); and the second chapter is the SR of in vitro studies that used methodological procedures to mimic the gastrointestinal digestion of proteins. Articles were selected according to the study population, interventions, control, results and type of study strategy. The searches were carried out in Pubmed, Web of Science, Science direct, Embase, Virtual Health Library and Scopus databases. The methodological quality assessment was performed using the Office of Health Assessment and Translation tool. A total of 1.986 articles were selected, resulting in 20 eligible studies. In the results section, we describe the methodological procedures used in vitro to simulate the digestion of animal or vegetable proteins. The third chapter refers to an in silico prospecting study of native peptides and analogues with anti-SARS-Cov-2 potential, derived from TTIp. Native peptides were obtained from enzymatic cleavages of TTIp in silico and analogues were generated by replacing amino acids in the primary sequences of native peptides. The anti-SARS-CoV-2 potential was investigated by simulating molecular dynamics between the peptides and the binding sites of transmembrane serine protease 2 (TMPRSS2), necessary for the entry of SARS-CoV-2 into the host cell, and generated a patent application: BR 10 2022 020330 0. The best interaction potential energy occurred between TMPRSS2 and one of the native peptides obtained by cleavage with trypsin (-287.48 kJ.mol-1) and its analogue peptide (-293.49 kJ.mol-1). Thus, both peptides had many hydrophobic residues, a common physical-chemical property among peptides that inhibit the entry of enveloped viruses, such as SARS-Cov-2, present in drugs used to treat of diseases related to these enveloped viruses. Therefore, this research presents an expressive scientific contribution, since the SR grouped important data that will provide subsidies for development of studies related to the clinical application of bioactive peptides, concluding that, although in vitro dynamic experimental models are more accurate, static models can be used to simulate human proteolytic digestion, provided that the physiological conditions are controlled and there is a comparison with in vivo studies to ensure greater accuracy of the results. In addition, the in silico study resulted, from the cleavage of TTIp 56/287, in potential candidates for agents that inhibit SARS-CoV-2 infection, through interaction with TMPRSS2, encouraging future in vitro and in vivo investigations that aim to use the peptides prospected here as specific medicines for the treatment of COVID-19 and other diseases.
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2
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FRANCISCO CARLOS DA SILVA JUNIOR
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A LOOK BEYOND THE PARTICULATE MATTER AND PRIORITY POLYCYCLIC AROMATIC HYDROCARBONS (PAHs): A COMPREHENSIVE INVESTIGATION OF THE TOXICITY OF RETENE
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Advisor : SILVIA REGINA BATISTUZZO DE MEDEIROS
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COMMITTEE MEMBERS :
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SILVIA REGINA BATISTUZZO DE MEDEIROS
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VIVIANE SOUZA DO AMARAL
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FABIANO PERES MENEZES
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JULIANA DA SILVA
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RENATA CANALLE
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Data: Feb 7, 2023
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Show Abstract
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Particulate matter (PM) is considered one of the greatest threats to human health worldwide, there is still significant uncertainty and knowledge gaps with regard to many of the chemicals responsible for these effects such as PAHs. Polycyclic Aromatic Hydrocarbons (PAHs) are a wide class of chemical compounds with significant mutagenic and carcinogenic potentials, thereby harming human well-being. The United States – Environmental Protection Agency (US-EPA) includes 16 priority PAHs in risk assessment or routine environmental analyses. Retene (1-methyl-7-isopropylphenanthrene; RET), a non-priority PAH, is one of the most widely produced PAHs following forest fires. At present, the toxic endpoints of RET remain unknown, especially in human health. Therefore, divided into five chapters, this work comprehensively investigated the toxic endpoints of RET. In the first chapter, through a systematic review and meta-analysis, it was demonstrated the presence of an association between exposure to PM and genetic instability in different human population, which this early damage may lead to susceptibility to complex diseases, including lung cancer. The second chapter demonstrated that much of the knowledge on the PAHs is restricted to the priority ones; however, there are other non-priority PAHs in the environment, whose mutagenic and carcinogenic potentials are underestimated in risk assessments and routine environmental analysis, especially RET. In the third chapter, using human lung cells (A549), the results revealed that RET can significantly decrease cell viability, increase oxidative stress, mitochondrial membrane potential, and mitochondrial contents, leading to an increased reactive oxygen species (ROS) production. Besides, RET led to a significant increase in chromosomal mutations such as micronuclei (MN), nucleoplasmic bridges (NPBs), and nuclear buds (NBUDs) frequency but not mutagenicity in Salmonella strains, as well as cell death, mainly due to necrosis. The fourth chapter showed, using in-silico analysis of differentially expressed genes (DEGs), interaction networks, and transcriptional profiles in A549 cells, that RET induced variations in several genes related to metabolism, transcriptional and translational control, oxidative stress, cell cycle, DNA replication, and repair. Genes involved in these processes may explain the toxic phenotypes demonstrated using the in-silico analyses such as genotoxicity, mutagenicity, and carcinogenicity. In the fifth chapter, using zebrafish (Danio rerio) as an experimental model, RET affected DNA generating micronuclei in erythrocytes and provided new evidence suggesting behavioral alterations due to changes in redox status and the mRNA expression of the neurotransmitter systems in zebrafish brains. Overall, these results reinforce the need to look beyond the priority in toxicological research on PAHs, especially those whose toxic potentials remain underestimated such as RET, highlighting the importance of including this PAH in risk assessments and routine environmental analysis in the future especially due its toxic effects in humans.
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3
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LUCIANA FENTANES MOURA DE MELO
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EXTRACTS AND FRACTIONS OF Coccoloba alnifolia: ANTIOXIDANT, IMMUNOMODULATION AND HEALING POTENTIAL in vitro
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Advisor : KATIA CASTANHO SCORTECCI
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COMMITTEE MEMBERS :
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KATIA CASTANHO SCORTECCI
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RAFAEL BARROS GOMES DA CAMARA
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RIVA DE PAULA OLIVEIRA
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CARLOS HENRIQUE SALVINO GADELHA MENESES
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DEBORAH YARA ALVES CURSINO DOS SANTOS
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Data: Mar 29, 2023
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Show Abstract
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Oxidative stress is an imbalance between the production of reactive species and antioxidants. The accumulation of reactive species can result in damage to tissues and organs, and it can induce various physiological changes that compromise cellular homeostasis. This imbalance can be associated with diseases such as cardiac, neurological, and cancer. It has been observed that plants' phenolic compounds can scavenge and neutralize the excess of free radicals. C. alnifolia, the plant that is the focus of our research, is a tree from the Atlantic Forest and is known to have few ethnobotanical studies. Previous studies by our group have shown that extracts obtained from the leaves of this plant have antioxidant potential. Thus, in this work, the aim was to evaluate the antioxidant and immunomodulatory potential of the ethanolic extract (EE), aqueous extract (AE), and two fractions obtained from the aqueous extract – the ethyl acetate (AF) and butanolic (BF). These two fractions were chosen based on the profile obtained after analysis in high-performance liquid chromatography coupled to a diode detector (HPLC-DAD). In addition, these fractions were characterized here for their antioxidant potential by using in vitro assays. It was observed that both have antioxidant potential. The FB, however, displayed higher antioxidant potential compared to the FA. Within the antioxidant activity, the results obtained pointed out the chelation of copper, which had not been observed previously in the crude extract (EA). From these results, the immunomodulatory potential was evaluated through assays with the RAW 267.4 cell. First, it was verified that both the extracts and the two fractions were not cytotoxic. Then, considering the complexity of the inflammatory process, the effect of EE and EA on the production of ROS after treatment with lipopolysaccharide (LPS) was analyzed. For this, three concentrations of extracts were used (100, 250, and 500 µg/mL). Both extracts were found to be able to reduce ROS production when compared to the positive control (treated with LPS). Furthermore, the ROS reduction achieved with EE was similar to the negative control (without LPS treatment). Next, the ability of the extracts and fractions to inhibit nitric oxide production was verified. Both the extracts and the fractions were able to inhibit the production and release of NO at the three concentrations tested, in a dose-dependent manner, with a reduction of more than 50%. Moreover, the phagocytic activity was evaluated only for EE and AE. This analysis was done only at a concentration of 500 μg/mL, and a reduction in phagocytosis of 30% for EE and 50% for EA was observed. Considering that cytokines are important mediators for the immune and inflammatory response, they were evaluated using two methods such as the measurement of cytokines by flow cytometry, where there was observed an increase in IL-17, and by qRT-PCR, where there was a reduction in iNOS and IL -10 mRNA in the treatment with EE. Based on these results, the potential of extracts and fractions in cell migration was also evaluated using the NHI/3T3 cell line (fibroblasts) in cultures submitted to the wound assay. The results obtained showed that both extracts and fractions in 24 h promoted cell migration, with 60% wound closure for the extracts, and 75% for the FB fraction, while the control (no extract) migration percentage was around 40%. Therefore, the data presented here show that the EE and EA and the FA and FB fractions of C. alnifolia have antioxidant and immunomodulatory potential, as well as the ability to induce cell migration involved in the in vitro wound healing process. Besides, it was evidenced in this study important properties of extracts and fractions that have the potential to act on the dynamics of the inflammatory process and tissue damage. Consequently, both extracts and fractions have potential applications for health biotechnology.
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4
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ANA CAMILA CAMPELO DE ALBUQUERQUE NUNES
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BIOQUÍMICA QUÂNTICA DOS ESTEROIDES ANABOLIZANTES AGONISTAS E SEUS MECANISMOS NO SÍTIO DE LIGAÇÃO DO RECEPTOR ANDROGÊNICO
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Advisor : UMBERTO LAINO FULCO
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COMMITTEE MEMBERS :
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UMBERTO LAINO FULCO
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EDILSON DANTAS DA SILVA JUNIOR
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EUDENILSON LINS DE ALBUQUERQUE
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JONAS IVAN NOBRE OLIVEIRA
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LUIZ ANTONIO RIBEIRO JUNIOR
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VALDER NOGUEIRA FREIRE
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Data: May 25, 2023
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Show Abstract
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Anabolic androgenic steroids (AAS), natural and synthetic derivatives of testosterone, are substances with both androgenic and anabolic characteristics, which are used both clinically and also by athletes for their anabolic properties. However, the anabolic effects of testosterone and its derivatives are questioned, as what is known is that they are effective in increasing performance and improving physical appearance, even with side effects that can impact health and well-being. This thesis presents two researches carried out, one related to a narrative review and the second in the field of ab initio simulation, based on principles of Quantum Mechanics. The first study exposes a narrative review through experimental studies pointing out the main effects of anabolic androgenic steroids on the cardiovascular system. The articles used for this review were published from 2010 to 2019 in the Pubmed and Scielo databases and in independent journals, after screening by title and abstract, 26 articles were selected. The results of this review confirmed that the use of anabolic steroids can cause structural and functional alterations in the cardiac musculature due to their use, through direct and/or indirect effects, which can cause and perpetuate cardiovascular diseases. The second study characterizes the binding site of AAS Testosterone, DHT and THG in complex with the androgen receptor, identifying the chemical interactions responsible for maintaining the drugreceptor complementarity and evaluating the changes that occur in these interactions, using the MFCC strategy in the light of the DFT and dielectric constant parameterizations. Our results confirm the importance of amino acid residues Asn 705, Leu707, Leu704, Leu701, Leu873, Met742, Met780, Phe764, Met745 and Thr877 for the DHT steroid. When we analyzed THG, the important residues were Arg752, Asn705, Leu873, Leu707, Leu704, Met745, Met742 and Phe764. As for the steroid Testosterone, the results confirm the importance of the amino acid residues Asn705, Gly708, Leu704, Leu701, Leu873, Met745, Met742 Met895, Met780, Phe764, Phe876, Thr877. 17 The computational method used in the second study emerges as an efficient alternative for drug development and can aid in the discovery and design of improved antiandrogen ligands with enhanced action.
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5
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RAFAEL OLIVEIRA DE ARAÚJO COSTA
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Encapsulation of proteins and peptides with anti-obesity properties: study of the effect of trypsin inhibitor isolated from tamarind seeds on weight change and satiety
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Advisor : ANA HELONEIDA DE ARAUJO MORAIS
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COMMITTEE MEMBERS :
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ANA HELONEIDA DE ARAUJO MORAIS
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ARNOBIO ANTONIO DA SILVA JUNIOR
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Catarina Gonçalves
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PRISCILLA VANESSA FINOTELLI
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SEVERINA CARLA VIEIRA CUNHA LIMA
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THAIS SOUZA PASSOS
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Data: May 30, 2023
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Show Abstract
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Obesity drives the search for new strategies to combat it. In this sense, several peptides and proteins with satietogenic activity have been studied because they regulate dietary intake and body weight. Thus, this thesis is divided into two chapters. First, we sought to understand how peptides and proteins, when encapsulated, acted on satiety, impacting weight gain and the state of obesity. For this, an integrative review was carried out by searching databases, using the keywords: peptide, protein, obesity, encapsulation, and anti-obesity agents, and selecting preclinical studies that compared the effect of peptides or proteins, encapsulated or not, on satiety. A total of 836 studies were selected, of which only four articles met the review's focus under the selection criteria. Although it has been a limited number of studies, among the effects observed with the encapsulation of these molecules are the greater efficiency in reducing weight gain, changes in the function of adipose tissue, in addition to the reduction of hormone levels that modulate appetite and body weight, promoting the potentiation of the effects of these peptides and proteins when encapsulated. In the second chapter, the impact of the trypsin inhibitor isolated from tamarind seeds (TTI) was investigated compared to the same one, nanoencapsulated in chitosan and isolated whey protein (EQPI). Thus, the ECW was analyzed and exposed to different pH conditions (7.0, 3.0, and 7.0) and temperatures (37°C, 7°C and -18°C) to evaluate the interaction between the TTI and its encapsulating agents monitored by antitrypsin activity. Subsequently, a preclinical study was carried out in which Wistar rats (n = 25) with obesity induced by a high glycemic index and high glycemic load (HGLI) diet for 17 weeks were divided into five groups and evaluated for ten days, with them: no treatment (HGLI + water), treatment 1 (nutritionally adequate diet), treatment 2 (with nutritionally adequate diet and ECW/12.5 mg/kg), treatment 3 (diet HGLI and ECW/12.5 mg/kg ) and treatment 4 (diet HGLI and TTI/25 mg/kg). These groups were evaluated for dietary intake, zoometric, biochemical, and inflammatory parameters. The ECW preserved the TTI, showing no inhibition for trypsin efficiently. When subjected to the optimal condition (constant stirring at 300 rpm, for approximately 12 h, at 20°C) for the release of the TTI, it showed 100% antitrypsin activity. However, exposing ECW to different pHs, significant anti-trips activity was observed only at gastric pH for 2 h. And regarding exposure to temperatures, ECW showed high antitrypsin activity, similar to TTI (37°C for 4 h, 7°C for three days, and 7°C for 7 days), demonstrating the complete release of TTI contained in ECW. In the preclinical study, obese Wistar rats treated with ECW significantly reduced body weight change (p < 0.05) compared to treatment with TTI. It was observed that only TTI treatment led to significant changes in inflammatory parameters (p < 0.05). The effect of ECW on weight indicates that encapsulation promoted an increase in the impact of TTI with sustained release. Therefore, the encapsulation of peptides and proteins is a promising strategy for the applicability of these molecules in the treatment of diseases such as obesity.
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6
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CASSIO RICARDO DE MEDEIROS SOUZA
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ANTI-FLAVIVIRIDAE ANTIBODIES IN GUILLAIN-BARRÉ AND CONGENITAL ZIKA SYNDROMES
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Advisor : SELMA MARIA BEZERRA JERONIMO
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COMMITTEE MEMBERS :
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ELIARDO GUIMARAES DA COSTA
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ERYVALDO SOCRATES TABOSA DO EGITO
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LUCAS PEDREIRA DE CARVALHO
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LUIZ BEZERRA DE CARVALHO JR
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SELMA MARIA BEZERRA JERONIMO
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Data: Oct 9, 2023
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Show Abstract
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Between 2015 and 2016, Brazil has experienced the major ZIKV epidemics registered until now, which became a public health problem not only because the great number of cases, but mainly by the onset of critical infection-associated clinical conditions, like Guillain-Barré (GBS) and Congenital Zika Syndromes (CZS). The evaluation of serological diagnosis efficacy and antibody response profile are two great issues in ZIKV infection context. Serological diagnosis is mainly performed by detection of anti-NS1 antibodies, but there is evidence about cross-reactivity with antibodies against other flaviviruses, which impairs the ZIKV infection specific diagnosis. Also, urge the importance of study anti-ZIKV antibodies response and kinetics post-infection, to determine the existence of long-term antibodies and its protective capacity. So, the present work focuses in these two issues. First, efficacy NS1-based serology to detection of IgM, total IgG and IgG3 anti-ZIKV and anti-DENV and the application in differential diagnosis of ZIKV infection in SGB was evaluated. The presence of anti-ZIKV and anti-DENV antibodies in patients who developed GBS between 2009 and 2018, residents of DENV endemic area, was registered. The presence of these antibodies in individuals who developed the syndrome before ZIKV introduction indicates the occurrence of cross-reactivity between anti-flaviviridae antibodies. Data indicates IgM and total IgG serology, besides considerable sensitivity, do not present specificity enough to supports differential diagnosis of ZIKV infection. However, anti-NS1 IgG3 serology shows better performance, making possible the identification of ZIKV-associated GBS cases with more efficacy. Next, the presence of anti-NS1, anti-E and neutralizing antibodies against ZIKV and/or DENV, was determined in woman who gave birth children with CZS, evaluated in two distinct periods, 8-24 months post-partum and 25-44 months post-partum, to identify the occurrence of long-term protective antibody response. The results indicate significant presence of anti-NS1, anti-E and neutralizing antibodies in woman evaluated between 8- and 24-months post-partum, as an important sign of previous ZIKV exposition. IN the second group, it was not possible to identify significant presence of anti-NS1 and anti-E antibodies, suggesting time-associated decay of the response. However, the presence of neutralizing antibodies was registered. Anti-ZIKV neutralizing response are related to presence of anti-ZIKV antibodies in first group and, int the second one, this phenomenon was associated with the occurrence of anti-DENV antibodies, suggesting cross-protective activity between anti-ZIKV and anti-DENV antibodies. It is necessary more studies to a better characterization of IgG3 role as specific markers of ZIKV infection, and long-term anti-NS1 and anti-E as anti-ZIKV neutralizing antibodies, to improve serological diagnosis strategies and enforces the knowledge about kinetics and protective role of anti-ZIKV antibodies.
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7
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JOHNY WYSLLAS DE FREITAS OLIVEIRA
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CHARACTERIZATION OF SODIUM DIETYLDITHIOCARBAMATE AS A POTENTIAL DRUG FOR THE TREATMENT OF CHAGAS DISEASE
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Advisor : MARCELO DE SOUSA DA SILVA
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COMMITTEE MEMBERS :
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ALINE RIMOLDI RIBEIRO
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ARNOBIO ANTONIO DA SILVA JUNIOR
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CLAUDIA JASSICA GONÇALVES MORENO
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HUGO ALEXANDRE DE OLIVEIRA ROCHA
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MARCELO DE SOUSA DA SILVA
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Data: Oct 19, 2023
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Show Abstract
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Chagas disease is an endemic zoonosis in Latin America, mainly affecting the poorer populations. The available drugs for treating both diseases have low effectiveness against intracellular forms, high toxicity, low bioavailability, and end up being unsafe for patients' health. Therefore, for several decades, efforts have been made to evaluate the possibility of using other drugs to combat this disease. One promising candidate is sodium diethyldithiocarbamate (DETC), previously described as a highly effective compound against Leishmania sp. and Trypanosoma cruzi in in vitro and in vivo models. However, in an attempt to enhance its bioavailability and reduce potential toxicity, this study evaluated the use of a nanosystem in combination with DETC through in vitro, in silico, and in vivo approaches against Trypanosoma cruzi. n this study, the nanoparticle was nanoformulated through nanoprecipitation using PLA as a polymer and tested in vitro for physicochemical characterization, cytotoxicity, cellular penetration, and antiparasitic activity. The nanoformulated PLA-DETC was found to be stable, with an average size of <200 nm and with IPD <0.3 and a zeta potential of -20 mV. It exhibited low cellular toxicity, causing no reduction of more than 20% in cell viability, had the ability to penetrate 3T3 and RAW cells within a 24-hour period, and also inhibited almost 70% of the Dm28c strain of T. cruzi within 24 hours. Additionally, it was observed that the nanosystem was capable of inducing an almost 70% increase in reactive oxygen species inside the parasites, which is a crucial factor that can lead to the parasite's death.Furthermore, an in silico analysis revealed that DETC had a more suitable ADMET profile based on physicochemical and medicinal chemistry properties compared to traditionally used drugs against Chagas disease, indicating lower toxicity. In vivo toxicity of both PLA-DETC nanoparticles and free drug at concentrations of 300 mg/kg and 1000 mg/kg was evaluated, considering hematological, biochemical, histopathological, and physical parameters following the acute toxicity characterization recommended by OECD in test 423. The results showed minimal alterations compared to the control group. A 10% reduction in platelet levels was observed, along with a slight increase in urea and AST, and a decrease in creatinine levels. Moreover, there were no significant changes in the animals' weight, behavior, or physical parameters, aligning with the control group. Finally, infection and treatment protocols were evaluated using DETC (300 mg/kg, 100 mg/kg, 0.36 mg, and 0.18 mg) and PLA-DETC nanoparticles (0.36 mg and 0.18 mg). A statistically significant reduction was observed for DETC, which exhibited a profile similar to benznidazole at a concentration of 100 mg/kg. Additionally, during the 7-day treatment, few alterations were observed, indicating low compound toxicity.
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8
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MARIA LÚCIA DA SILVA CORDEIRO
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EXTRACTS OF Talisia esculenta PRESENT COMPOUNDS BIOACTIVES WITH ANTIOXIDANT ACTIVITY AND POTENTIAL ANTI-INFLAMMATORY IN IN VITRO AND IN VIVO MODELS
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Advisor : KATIA CASTANHO SCORTECCI
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COMMITTEE MEMBERS :
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ADRIANA FERREIRA UCHOA
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DAYANNE LOPES GOMES
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DEBORAH YARA ALVES CURSINO DOS SANTOS
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KATIA CASTANHO SCORTECCI
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RAFAEL BARROS GOMES DA CAMARA
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Data: Oct 24, 2023
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Show Abstract
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Commonly referred to as Pitombeira, Talisia esculenta (Sapindaceae) is an indigenous species endemic to Northeastern Brazil with significant economic and medicinal promise. While the fruit of this plant serves as a food source, its rind remains largely underutilized in pharmacological applications and is often discarded without further biotechnological exploration. Traditional folk medicine employs leaf infusions from T. esculenta as remedies for hip pain, rheumatism, and hypertension. However, comprehensive studies evaluating its pharmacological efficacy, toxicological profile, and phytochemical constituents are notably limited. In this context, the aim of this study was to obtain hydroethanolic extracts and infusions of the leaves and fruit rinds of T. esculenta. Subsequently, it aims to perform its phytochemical characterization, measure its antioxidant and anti-inflammatory potential in vitro and its toxicity and antioxidant capacity in vivo. For this purpose, two animal models will be used, Tenebrio molitor and Zebrafish. The hydroethanolic extract (70%) and the aqueous extract (infusion) were prepared from the fresh leaves and fruit peels of the species, obtaining the hydroethanolic extract of the leaves (HF), infusion of the leaves (IF), hydroethanolic extract of the fruit peels (HC), and infusion of the fruit peels (IC). Firstly, the antioxidant capacity was assessed using various assays: Total Antioxidant Capacity (CAT), DPPH radical scavenging, reducing power, and copper chelation. Cytotoxicity was evaluated through the application of MTT and wound healing assays, while the antioxidant potential was quantified in NIH/3T3 cells. As the extracts IF and HC were selected for further investigation on their effects on T. molitor and phytochemical characterization by quantifying the content of phenolics and flavonoids and analyzing them by CLAE-DAD (High-Performance Liquid Chromatography with Diode-Array Detection). This work also analysed the antioxidant and anti-inflammatory potential of all the T. esculenta extracts on the RAW 264.7 (macrophage strain). In addition, the protective effects of T. esculenta extracts were investigated using models of oxidative stress induced by H2O2 and CuSO4 and ascorbate in zebrafish, based on the analysis of levels of reactive oxygen species (ROS). The assays indicated that both extract types exhibited effective radical scavenging capabilities and a high capacity for copper ion chelation. It was observed that T. esculenta extracts had no effects on MTT reduction or cell migration. Furthermore, these extracts protected cells from oxidative stress induced by both CuSO4 and ascorbate. Survival analysis revealed that IF and HC exhibited no significant toxicity at the evaluated concentrations. Moreover, these extracts mitigated the effects of CuSO4 exposure on T. molitor larvae. Specifically, an increase in larval survival was observed when treated with these extracts compared to the positive control. Additionally, a reduction in melanization was verified in the animals. The CLAE-DAD analyse revealed the presence of compounds mostly from the flavonoid class, and the presence of gallic acid, quercitrin and rutin was identified In RAW 264.7 cell assays, the extracts demonstrated no cytotoxicity as per MTT tests and effectively mitigated oxidative damage induced by H2O2 in macrophages. However, only HC was able to reduce nitric oxide (NO) production in LPS-stimulated macrophages. Moreover, the protective effects of T. esculenta extracts on H2O2 and CuSO4 and ascorbate-induced oxidative stress model in zebrafish were also investigated based on the analysis of ROS levels by fluorescence microscopy. All extracts reduced ROS levels in larvae exposed to H2O2, however a significant reduction was verified for HF, IF and HC, which were statistically equal to the negative control. All samples reduced ROS levels in the CuSO4 and ascorbate-induced stress model. Collectively, these findings suggest that T. esculenta is a promising source of bioactive compounds with potent antioxidant and anti-inflammatory properties, warranting further research for potential biotechnological applications.
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9
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ARANTHYA HEVELLY DE LIMA COSTA
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Quantum Biochemistry of Ligand-Protein Interactions Between DHODH and TyrRS Enzymes of Plasmodium falciparum.
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Advisor : UMBERTO LAINO FULCO
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COMMITTEE MEMBERS :
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UMBERTO LAINO FULCO
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EUDENILSON LINS DE ALBUQUERQUE
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JONAS IVAN NOBRE OLIVEIRA
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VANESSA DE PAULA SOARES RACHETTI
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EVELINE MATIAS BEZERRA
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RONER FERREIRA DA COSTA
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Data: Nov 10, 2023
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Show Abstract
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Malaria is a parasitic disease caused by unicellular protozoa of the genus Plasmodium and occurs in more than 90 countries, with the African and Asian continents predominating. The use of antimalarial drugs is critical for both treatment and prevention of the disease. However, the parasites have begun to develop resistance to antimalarials, making current therapies ineffective in controlling the parasite. Therefore, new therapeutic approaches are needed to overcome the drug resistance of parasites and increase the efficacy of drug therapy against the disease. The aim of this research is to characterize the relationships that affect the behavior of protein-ligand complexes of enzymes from Plasmodium falciparum. The first study aims to characterize dihydroorotate dehydrogenase (DHODH) and to present the energy levels of the enzyme in the complexes with wild-type PfDHODH, with ligands DSM483, DSM557, and DSM1, and with PfDHODH with the C276F mutation together with DMS1. In the second study, tyrosine RNAt synthetase (TyrRS) is examined, both in its wild-type PfTyrRS linked to ML901-Tyr and AMS-Tyr, and with the S234C mutation, again in complex with ML901-Tyr. Using the method of molecular fractionation with conjugated layers (MFCC), amino acid residues were partitioned to calculate individual interactions using the formalism DFT (Functional Density Theory). The study with PfDHODH enzyme revealed that amino acid residues Arg265, Cys184 and Phe188 were crucial for the interactions and exhibited significant interaction energies with the four complexes studied. Moreover, the energy value of the DSM1 inhibitor was not affected by the structural changes caused by the C276F mutation, demonstrating its ability to bind to the enzyme. Working with PfTyrRS, six important residues were found to be common to the three complexes. These residues include Asp61, Gln73, Gln192, Gln210, Met237, and Phe63, most of which play essential roles in ATP binding. This discovery provides a comprehensive understanding of the interaction between PfDHODH and PfTyrRS enzymes and their inhibitors. The information gathered in this study is proving to be relevant to the development of new drug therapies and could become a tool in exploring the design of new, more sophisticated and effective antimalarial drugs.
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10
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PAULO EDUARDO TOSCANO SOARES
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Application of Next Generation Sequencing in Penaeus vannamei shrimp cultives from Rio Grande do Norte
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Advisor : DANIEL CARLOS FERREIRA LANZA
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COMMITTEE MEMBERS :
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DANIEL CARLOS FERREIRA LANZA
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RODRIGO JULIANI SIQUEIRA DALMOLIN
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TETSU SAKAMOTO
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JOSÉ MIGUEL ORTEGA
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SÁVIO TORRES DE FARIAS
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Data: Dec 1, 2023
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Show Abstract
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Over the last two decades, short-read sequencing has become a central tool in genomic studies allowing the rapid and accurate discovery of high-quantity DNA sequences. This made it possible to apply sequencing in activities of economic interest such as shrimp farming, allowing, for example, the identification of pathogens and genotyping of hundreds to thousands of shrimps simultaneously and the detection of genetic variants of these pathogens. This sequencing can also help in the discovery of genetic markers, such as microsatellites and SNPs, which can be brought together in a genotyping panel, making it scalable and reducing the cost per sample of its application. Specifically in shrimp farming, this technology has proven to be extremely valuable, especially for studying the shrimp genome. Nuclear and mitochondrial genome analyzes provide crucial information about origin, adaptability and other evolutionary aspects that are vital for optimizing shrimp farming. Due to the high depth of coverage of these sequences, it is possible to capture genetic diversity in the samples, allowing the discovery of genetic variations in mitochondrial populations (heteroplasmy) occurring in shrimp and in pathogens, such as viruses that affect them. This presents a unique opportunity to study the impacts of this genetic diversity on the use of mitochondrial markers and the discovery of viral variants and quasispecies. This translates into more informed management practices, minimizing outbreaks and optimizing shrimp health. The implementation of panels based on SNPs is a clear example of the impact of genotyping, demonstrating how the technology can be used to improve genetic selection practices in shrimp farming. In this work, the impact of mitochondrial genetic diversity was evaluated in a virus that affects shrimp farming and shrimp using bioinformatics approaches. First, the occurrence of heteroplasmy was assessed by analyzing muscle sequencing data from a single shrimp, detecting patterns of variability and conservation in the mitogenomes of that individual, in addition to comparing this internal variability with that observed among other mitogenomes and observing the impact on markers in the control region, widely used in population studies. Second, the genetic variability of the shrimp infectious myonecrosis virus obtained from tanks in a viral outbreak situation was evaluated, obtaining the genotype of the most prevalent variant for phylogenetic analyses, revealing its possible origin and relationship with other existing lineages, and secondary variants, evaluating the occurrence of viral quasispecies. Finally, based on previously existing data, a panel of 25 SNP markers (15 genomic and 10 mitochondrial) was developed aiming at low-cost genotyping of the shrimp Penaeus vannamei by multiplex PCR amplification followed by silico parentage analysis. This last project is currently ongoing, and the primers have already been evaluated, and now it remains to continue with sequencing and bioinformatics analyses. In short, this work showed that short-read sequencing is capable of capturing genetic diversity, bringing new insights to shrimp farming by exposing the impact on markers, viral variability and, in the future, the impact of this variability on genotyping panels.
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11
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BRUNO AMORIM DO CARMO
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IN VITRO AND IN VIVO ACTIVITY OF ANTIMICROBIAL PEP-TIDES ANALOGS INCORPORATED IN TO PLGA NANOPARTICLES AGAINSTStaphylococcusaureus
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Advisor : MATHEUS DE FREITAS FERNANDES PEDROSA
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COMMITTEE MEMBERS :
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MATHEUS DE FREITAS FERNANDES PEDROSA
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MARCELO DE SOUSA DA SILVA
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ARNOBIO ANTONIO DA SILVA JUNIOR
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ENEAS DE CARVALHO
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MARIANA DE SOUZA CASTRO
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Data: Dec 7, 2023
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Show Abstract
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The emergence of microorganisms resistant to conventional drugs consti-tutesaseriousglobalpublichealthissuethatlimitstherapeuticoptionsand underscores the urgent need for the discovery of new antimicrobialagents.ThevenomofthescorpionTityusstigmurusservesasarichsource of biologically active components, including antimicrobial peptideswith high therapeutic potential. Stigmurin, an antimicrobial peptide withantibiotic activity against Gram-positive bacterial strains, was used as aprototype for structural modifications, resulting in the generation of 31analogs (patent BR102015029044-6). In this study, the three-dimensionalconformation was elucidated using nuclear magnetic resonance (NMR),stability was investigated through circular dichroism, and the in vitro andin vivo antibacterial action of two analog peptides of Stigmurin, namedStigA25 and StigA31, was assessed. In addition to the remarkable antimi-crobial activity described in a previous study, StigA25 and StigA31 exhib-ited concentration-dependent hemolytic activity compared to the proto-type peptide. To mitigate cytotoxicity, enhance stability, and optimizetherapeutic efficiency of these peptides, the effect of associating thesebioactive components with poly(lactic-co-glycolic acid) (PLGA) nanopar-ticles was investigated. StigA25 and StigA31 displayed a predominant α-helical conformation by NMR, with high structural stability under varioustemperature, pH, and salt conditions as determined by circular dichroism.The incorporation of these components into PLGA nanoparticles resultedinastablenanosystemwithantimicrobialactivityequivalenttothatoffree peptides and a significant reduction in toxicity. Scanning and trans-mission electron microscopy demonstrated that both free and nanoparticulated peptides exerted their action on the bacterial cell membrane, causingmembrane disruption. Therefore, this study reveals the high therapeuticpotential of StigA25 and StigA31 when associated with PLGA nanosystems, suggesting the use of this nanocarrier as a promising tool for thetherapeutic application of these bioactive molecules in the development ofnewanti-infectious agents.
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